I'm guessing you mean one on each side bolted to the outer frame. When they are mounted in opposing directions, the sine waves (or whatever the waveform is) will cancel each other out and it will seem like they aren't even running. To compensate you have to reverse the polarity of one of the shakers. This will bring the phase back into alignment. This was actually my first test and it definitely worked, but going through all that metal seemed to add an unacceptable delay to the seat. For me the delay was a deal breaker.I just put a very basic setup on my P1-X (have a thread "first foray into tactile feedback").
I have very little experience, but one thing I learned for certain, mounting something directly on the the side of that rig will not transfer well to your seat. I had to put something between my seat rails and the main part of the frame to keep the feedback from being lost throughout the rig.
This was with two transducers, not a Buttkicker.
I later tried putting both on the rear frame (in phase this time), and it was much better. My latest attempt is under the seat rails similar to what you did. The experimentation continues.